Journal: bioRxiv
Article Title: Sialic acids are a barrier to the entry of non-influenza orthomyxoviruses
doi: 10.64898/2026.01.15.699645
Figure Lengend Snippet: A . Correlations between RNA-seq data for sialyltransferases and infectivity of VSV pseudotypes harbouring WBV, SINUV or OZV GPs, as well as PR8 influenza. Gene expression data were quantified as fragments per kilobase per million (FPKM) and infection rate as the percentage of infected cells. Both metrics were scaled between 0 and 100, transformed as log 2 (x+1), and their Pearson correlation was calculated. Genes for which at least one virus showed a significant ( P < 0.01) correlation are shown. The heatmap depicts the average Pearson correlation from two independent infection assays, as shown in the scale bar. The numbers inside the heatmap represent the levels of significance (1: P < 0.01, 2: P < 0.001, 3: P < 0.0001). VSV pseudotyped with its own glycoprotein was included as a control. B . Examples of scatter plots between infectivity and RNA-seq data for the ST6GALNAC2 and ST3GAL5 genes. Pearson correlation coefficients (r) and their statistical significance ( P ) are shown (ns: not significant). The data points for the SK-MEL-28 cell line are marked in red, and those for IGROV-1 cell line are marked in blue. C . SK-MEL-28 and IGROV-1 cells were incubated with biotin-labelled MAL II and SNA lectins to quantify by flow cytometry α2,3- and α2,6-linked SAs, respectively. Lectin-treated cells were incubated with Streptavidin-Dylight488TM (strep-dye) and the signal emitted by the dye was used to quantify SAs. Left: fluorescence data from two independent experiments. Cells treated without lectin and incubated with the strep-dye (strep-dye only) were used as negative control. A t-test between SK-MEL-28 and IGROV-1 values was carried out using log-transformed data (**: P < 0.01; ***: P < 0.001; ns: P > 0.05). Right: fluorescence level histogram from one representative experiment is shown. Y-axis shows the relative cell count (%) of α2,3- or α2,6-linked SAs-positive cells, and X-axis shows the intensity of fluorescence.
Article Snippet: Biotinylated lectins MAL II ( Maackia Amurensis Lectin II , L-1260-2, Vector labs) and SNA ( Sambucus Nigra Lectin , B-1305-2, Vector labs) that specifically bind to α2,3- and α2,6-SAs, respectively, were added at 4°C for 30 min at a concentration of 20 μg/mL in FACS buffer.
Techniques: RNA Sequencing, Infection, Gene Expression, Transformation Assay, Virus, Control, Incubation, Flow Cytometry, Fluorescence, Negative Control, Cell Characterization